blastn (Query:DNA vs. Target:DNA)

Query

File Upload:
 or COPY & PASTE:



Program

  • blastn

Data Sets

  • All DDBJ/EMBL/GenBank sequence data (DDBJ periodical release + daily updates)
  • general data (DDBJ periodical release + daily updates, but no PAT,EST,STS,GSS,HTG,TSA)
  • DDBJ updates
  • PAT: sequence data related to patent applications
  • ENV: sequences obtained via environmental sampling methods
  • GSS: Genome Survey Sequences
  • HTC: High throughput cDNA sequences (other than EST)
  • HTG: high throughput genomic sequences
  • STS: Sequence tagged sites
  • EST: (Expressed Sequence Tag)
  • TSA: Transcriptome shotgun assemblies

    Optional Parameters

    SCORES
    ALIGNMENTS
    EXPECT
    FILTER ON OFF
    WORD SIZE